STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2711KEGG: dde:Dde_2858 cytochrome c family protein. (156 aa)    
Predicted Functional Partners:
DvMF_2712
TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer.
 
     0.808
DvMF_2586
KEGG: dde:Dde_0639 hypothetical protein.
  
     0.681
DvMF_1325
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein.
  
     0.665
DvMF_1463
PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein.
  
   
 0.662
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
  
     0.639
DvMF_1136
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein.
  
     0.632
DvMF_0779
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase.
  
     0.627
DvMF_0922
Conserved hypothetical protein; KEGG: glo:Glov_3362 glycosyl transferase family 2.
  
     0.615
DvMF_1546
KEGG: dde:Dde_0564 hypothetical protein.
  
     0.609
DvMF_2790
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1667 TPR repeat-containing protein.
  
     0.606
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.