STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2725PFAM: Resolvase domain; KEGG: met:M446_1223 resolvase domain. (228 aa)    
Predicted Functional Partners:
DvMF_0731
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein.
   
    0.611
DvMF_1290
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein.
   
    0.611
DvMF_0695
TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein.
  
    0.532
DvMF_2642
KEGG: dde:Dde_3102 hypothetical protein.
   
    0.489
DvMF_2667
KEGG: dde:Dde_2939 hypothetical protein.
   
    0.489
DvMF_1039
KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA.
  
  
 0.435
DvMF_2804
TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: azc:AZC_3677 putative chromate transporter.
  
   
 0.432
DvMF_3183
Transcriptional regulator, TraR/DksA family; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator.
   
  
 0.427
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.