Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2727Recombinase; PFAM: Resolvase domain; Recombinase; KEGG: dde:Dde_2774 hypothetical protein. (590 aa)    
Predicted Functional Partners:
DvMF_2728
PFAM: magnesium chelatase ChlI subunit; KEGG: dde:Dde_2773 competence protein ComM, putative.
       0.589
DvMF_2726
SMART: ParB domain protein nuclease; KEGG: azc:AZC_1530 hypothetical protein.
  
  
 0.535
DvMF_2642
KEGG: dde:Dde_3102 hypothetical protein.
   
    0.484
DvMF_2667
KEGG: dde:Dde_2939 hypothetical protein.
   
    0.484
DvMF_1657
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family.
  
   
 0.447
DvMF_2729
Hypothetical protein; KEGG: met:M446_5119 flagellar hook-length control protein.
       0.415
DvMF_1658
PFAM: Terminase; KEGG: bph:Bphy_7140 terminase.
 
   
 0.403
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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