Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
DvMF_2734PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein. (145 aa)    
Predicted Functional Partners:
DvMF_2737
PFAM: type II secretion system protein; KEGG: dde:Dde_2364 hypothetical protein.
  
  
 0.803
DvMF_2739
KEGG: dde:Dde_2362 response regulator receiver domain-containing protein.
  
  
 0.791
DvMF_2742
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dde:Dde_2359 putative pilus assembly protein CpaB.
  
  
 0.785
DvMF_2736
PFAM: type II secretion system protein; KEGG: dde:Dde_2365 hypothetical protein.
  
    0.719
DvMF_2738
PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein.
  
  
 0.707
DvMF_2733
PFAM: von Willebrand factor type A; KEGG: dde:Dde_2368 von Willebrand factor, type A.
  
    0.695
DvMF_2732
PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein.
       0.645
DvMF_2741
PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.631
DvMF_2731
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase.
  
    0.564
DvMF_2743
PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein.
  
  
 0.535
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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