STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2735PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2366 TPR repeat-containing protein. (384 aa)    
Predicted Functional Partners:
DvMF_2736
PFAM: type II secretion system protein; KEGG: dde:Dde_2365 hypothetical protein.
 
   
 0.709
DvMF_2737
PFAM: type II secretion system protein; KEGG: dde:Dde_2364 hypothetical protein.
 
     0.709
DvMF_2117
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat-containing protein.
  
     0.699
DvMF_2742
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dde:Dde_2359 putative pilus assembly protein CpaB.
 
     0.676
DvMF_2739
KEGG: dde:Dde_2362 response regulator receiver domain-containing protein.
 
     0.670
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.666
DvMF_1051
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1288 TPR repeat-containing protein.
 
 
 0.665
DvMF_2743
PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein.
 
     0.662
DvMF_2741
PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein; Belongs to the bacterial secretin family.
 
     0.651
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.648
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.