Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2759PFAM: protein of unknown function DUF255; KEGG: sru:SRU_1548 protein of unknown function, DUF255 family. (756 aa)    
Predicted Functional Partners:
DvMF_0693
PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein.
    
 
 0.539
DvMF_0694
PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein.
    
 
 0.539
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
    
 
 0.539
DvMF_1495
PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein.
    
 
 0.539
DvMF_2050
KEGG: dde:Dde_0038 hypothetical protein.
    
 
 0.539
DvMF_0267
PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase.
   
 
 0.457
DvMF_2220
PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413 putative acyl-CoA thioesterase precursor.
   
 
 0.457
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
   
   0.454
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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