Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DvMF_2766KEGG: cbf:CLI_1113 hypothetical protein. (152 aa)    
Predicted Functional Partners:
DvMF_2733
PFAM: von Willebrand factor type A; KEGG: dde:Dde_2368 von Willebrand factor, type A.
  
     0.635
DvMF_2767
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
       0.539
DvMF_0851
PFAM: Sporulation domain protein; KEGG: lip:LI0230 hypothetical protein.
  
     0.507
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
  
     0.507
DvMF_3113
PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein.
  
     0.499
DvMF_2397
KEGG: dde:Dde_0264 hypothetical protein.
  
     0.493
DvMF_0164
KEGG: mms:mma_3662 hypothetical protein.
  
     0.466
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
  
     0.457
DvMF_2910
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein.
  
     0.452
DvMF_0751
KEGG: lip:LIC026 hypothetical protein.
  
     0.442
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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