Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DvMF_2772Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase. (812 aa)    
Predicted Functional Partners:
DvMF_2773
PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_2831 substrate-binding protein, putative.
       0.786
DvMF_2549
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase.
 
 
 0.678
DvMF_1419
KEGG: rci:RCIX1753 putative signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
 
 0.651
DvMF_1772
PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein.
 
 
 0.640
DvMF_1730
Multi-sensor signal transduction histidine kinase; KEGG: dde:Dde_3465 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein.
  
   0.635
DvMF_2334
PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein.
 
 
 0.631
DvMF_1991
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
 
 
 0.613
DvMF_1131
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase.
 
 
 
 0.606
DvMF_2551
PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein.
  
   0.595
DvMF_0063
PFAM: response regulator receiver; KEGG: dde:Dde_1521 response regulator receiver domain-containing protein.
 
   0.593
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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