STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2777KEGG: dde:Dde_2827 hypothetical protein. (307 aa)    
Predicted Functional Partners:
DvMF_2778
KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
     
 0.788
DvMF_0004
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2348 hypothetical protein.
  
 
 0.785
DvMF_2776
KEGG: dde:Dde_2828 hypothetical protein.
       0.780
DvMF_2779
KEGG: dde:Dde_2825 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase.
     
 0.776
DvMF_1770
KEGG: sfu:Sfum_0655 hypothetical protein.
  
   
 0.701
DvMF_2191
KEGG: dde:Dde_0600 hypothetical protein.
  
     0.700
DvMF_1551
KEGG: dde:Dde_0523 hypothetical protein.
  
     0.689
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.683
DvMF_2395
KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein.
  
     0.615
DvMF_2186
PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.
  
     0.609
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.