Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2781PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter, permease protein. (231 aa)    
Predicted Functional Partners:
DvMF_2780
KEGG: dde:Dde_0234 ABC transporter, periplasmic substrate-binding protein.
 
  
 0.987
DvMF_2782
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0232 ATPase.
 
  
 0.981
DvMF_2763
KEGG: mag:amb3043 ABC-type tungstate transport system, permease component.
 
  
 0.962
DvMF_2264
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding.
 
    0.824
DvMF_1797
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
    0.799
DvMF_1956
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase.
 
   
 0.696
DvMF_1358
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
     0.633
DvMF_2671
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative.
 
   
 0.483
DvMF_2474
TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_3697 molybdenum ABC transporter, periplasmic molybdate-binding protein.
     
 0.468
DvMF_0978
PFAM: regulatory protein MerR; KEGG: dde:Dde_2633 MerR family transcriptional regulator.
   
    0.444
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.