Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_2782PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0232 ATPase. (284 aa)    
Predicted Functional Partners:
DvMF_2781
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter, permease protein.
 
  
 0.981
DvMF_0657
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system.
  
 0.978
DvMF_0656
PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein.
  
 0.973
DvMF_0658
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component.
  
 0.964
DvMF_2780
KEGG: dde:Dde_0234 ABC transporter, periplasmic substrate-binding protein.
 
  
 0.936
DvMF_1317
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2953 ATPase.
  
  
  0.896
DvMF_2763
KEGG: mag:amb3043 ABC-type tungstate transport system, permease component.
 
  
 0.879
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
 
  
0.863
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
     
 0.846
DvMF_2477
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3696 ABC transporter related.
 
  
 
0.738
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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