Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2802PFAM: transport-associated; KEGG: dde:Dde_2000 transport-associated protein. (184 aa)    
Predicted Functional Partners:
DvMF_1335
PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; Belongs to the UPF0307 family.
  
    0.569
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
    0.519
DvMF_1889
KEGG: dde:Dde_3700 hypothetical protein.
   
  
 0.498
DvMF_2803
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin.
       0.487
katA
Catalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.475
DvMF_1927
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein.
  
     0.472
DvMF_3144
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein.
  
     0.458
DvMF_0856
PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like.
 
   
 0.448
DvMF_2863
PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein.
  
  
 0.440
DvMF_1981
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: dde:Dde_0133 bacterioferritin.
  
  
 0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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