STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2807PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_0094 major facilitator superfamily MFS_1. (414 aa)    
Predicted Functional Partners:
DvMF_2808
Metal dependent phosphohydrolase; KEGG: mka:MK0494 HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
 
     0.873
DvMF_2806
KEGG: mta:Moth_1023 hypothetical protein.
 
     0.766
DvMF_2805
KEGG: bid:Bind_2524 ChrB protein.
 
     0.761
DvMF_2517
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
   
 
 0.486
DvMF_3018
PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes.
  
  
 0.482
DvMF_2956
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1340 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.464
DvMF_3113
PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein.
  
   
 0.443
DvMF_2954
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component.
 
 
 
 0.433
DvMF_2792
PFAM: YceI family protein; SMART: Rhodanese domain protein; KEGG: dps:DP1288 hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.423
DvMF_0696
PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0825 hypothetical protein.
 
 
 0.416
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.