STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2817KEGG: dde:Dde_1000 hypothetical protein. (108 aa)    
Predicted Functional Partners:
DvMF_2818
TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dde:Dde_0998 methylated-DNA--protein-cysteine methyltransferase.
       0.787
DvMF_1577
KEGG: dde:Dde_3025 hypothetical protein.
  
     0.725
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.677
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.635
DvMF_0847
KEGG: dde:Dde_2292 hypothetical protein.
  
     0.599
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.545
DvMF_0651
KEGG: dde:Dde_2862 hypothetical protein.
  
     0.535
DvMF_1815
KEGG: dde:Dde_0283 hypothetical protein.
  
     0.530
DvMF_0972
KEGG: dde:Dde_2610 hypothetical protein.
  
     0.529
DvMF_2978
KEGG: dde:Dde_1354 hypothetical protein.
  
     0.493
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.