Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2842KEGG: dde:Dde_1017 hypothetical protein. (98 aa)    
Predicted Functional Partners:
DvMF_2843
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_1016 two component Fis family transcriptional regulator.
       0.456
DvMF_2841
PFAM: response regulator receiver; KEGG: dde:Dde_1018 response regulator receiver domain-containing protein.
  
    0.450
DvMF_2844
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_3740 putative PAS/PAC sensor protein.
       0.431
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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