STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2857PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 predicted amidophosphoribosyltransferases. (274 aa)    
Predicted Functional Partners:
DvMF_0771
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative.
 
 
 0.939
DvMF_2450
PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein.
 
  
 0.868
DvMF_3086
PFAM: DNA repair protein RadC; KEGG: dde:Dde_2442 DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.845
DvMF_2719
KEGG: dde:Dde_2808 competence protein ComM, putative.
 
  
 0.825
DvMF_2728
PFAM: magnesium chelatase ChlI subunit; KEGG: dde:Dde_2773 competence protein ComM, putative.
 
  
 0.819
DvMF_2856
PFAM: NADPH-dependent FMN reductase; KEGG: dde:Dde_0785 iron-sulfur flavoprotein, putative.
  
    0.808
DvMF_2854
Hypothetical protein.
       0.773
DvMF_2855
Hypothetical protein.
       0.773
DvMF_2285
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.745
DvMF_2881
PFAM: protein of unknown function UPF0102; KEGG: lip:LI0223 predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
 
    0.731
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.