Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_2861PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein. (308 aa)    
Predicted Functional Partners:
DvMF_2860
PFAM: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein.
  
    0.608
DvMF_0892
KEGG: dde:Dde_2398 hypothetical protein.
  
     0.536
DvMF_1335
PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; Belongs to the UPF0307 family.
  
     0.506
DvMF_1354
PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein.
  
     0.452
DvMF_0927
PFAM: protein of unknown function UPF0005; KEGG: dde:Dde_2601 membrane protein, putaive; Belongs to the BI1 family.
   
  
 0.421
htpX
PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase; Belongs to the peptidase M48B family.
   
  
 0.405
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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