STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2881PFAM: protein of unknown function UPF0102; KEGG: lip:LI0223 predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. (146 aa)    
Predicted Functional Partners:
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.805
DvMF_2882
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.805
DvMF_2857
PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 predicted amidophosphoribosyltransferases.
 
    0.731
DvMF_2728
PFAM: magnesium chelatase ChlI subunit; KEGG: dde:Dde_2773 competence protein ComM, putative.
 
  
 0.706
DvMF_2719
KEGG: dde:Dde_2808 competence protein ComM, putative.
 
  
 0.686
DvMF_0771
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA, putative.
 
    0.627
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
 
     0.613
DvMF_2879
PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component, putative.
       0.596
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.548
DvMF_2878
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: dde:Dde_1090 HPrNtr.
  
    0.531
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.