STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
DvMF_2891KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like. (625 aa)    
Predicted Functional Partners:
DvMF_1749
PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase.
  
  
 0.899
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
 
 0.881
DvMF_2890
KEGG: dde:Dde_1105 hypothetical protein.
       0.827
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
 
    0.781
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
 
     0.775
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.773
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
  
     0.771
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
 
     0.771
DvMF_0568
KEGG: dde:Dde_1660 DafA protein.
  
     0.770
DvMF_0342
KEGG: dde:Dde_1995 hypothetical protein.
  
     0.769
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.