Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DvMF_2895PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative. (754 aa)    
Predicted Functional Partners:
DvMF_2896
KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative.
 
 
 0.997
DvMF_2894
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1111 heterodisulfide reductase, putative.
 
 
0.990
DvMF_1868
PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein.
  
 
 0.984
DvMF_0322
KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit.
 
 
 0.981
DvMF_2897
KEGG: dde:Dde_1114 hypothetical protein.
  
   0.980
DvMF_0323
CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C.
 
 
 0.978
DvMF_0324
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, A subunit.
 
 
0.952
DvMF_0325
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit, putative.
 
 
0.951
hydB
Nickel-dependent hydrogenase large subunit; Catalyzes the reversible oxidoreduction of molecular hydrogen, in conjunction with a specific electron acceptor, cytochrome c3.
  
 
 0.949
DvMF_0273
PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing.
  
 
 0.949
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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