Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2904PFAM: protein of unknown function DUF490; KEGG: lip:LI0689 hypothetical protein. (1937 aa)    
Predicted Functional Partners:
DvMF_2905
PFAM: surface antigen (D15); KEGG: lip:LI0688 outer membrane protein.
 
 0.999
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.895
DvMF_0212
KEGG: dde:Dde_1682 hypothetical protein.
 
  
 0.778
DvMF_2863
PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein.
    
 0.723
DvMF_2908
TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin putative; KEGG: dde:Dde_1116 hypothetical protein.
 
     0.607
DvMF_0974
Transcriptional regulator, MucR family; KEGG: lip:LI0064 predicted transcriptional regulator.
  
     0.579
DvMF_0846
KEGG: dde:Dde_3699 hypothetical protein.
  
     0.527
DvMF_1806
KEGG: dde:Dde_0303 MucR family transcriptional regulator.
  
     0.518
DvMF_2906
KEGG: lip:LI0341 hypothetical protein.
  
  
 0.513
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
     0.495
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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