STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2905PFAM: surface antigen (D15); KEGG: lip:LI0688 outer membrane protein. (789 aa)    
Predicted Functional Partners:
DvMF_2904
PFAM: protein of unknown function DUF490; KEGG: lip:LI0689 hypothetical protein.
 
 
 0.994
DvMF_0974
Transcriptional regulator, MucR family; KEGG: lip:LI0064 predicted transcriptional regulator.
  
     0.664
DvMF_1806
KEGG: dde:Dde_0303 MucR family transcriptional regulator.
  
     0.652
DvMF_2256
KEGG: dde:Dde_0346 MucR family transcriptional regulator.
  
     0.603
DvMF_2906
KEGG: lip:LI0341 hypothetical protein.
     
 0.529
DvMF_2903
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB.
       0.447
DvMF_2908
TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin putative; KEGG: dde:Dde_1116 hypothetical protein.
 
     0.447
DvMF_0830
PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1530 hypothetical protein.
  
    0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.