Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2906KEGG: lip:LI0341 hypothetical protein. (256 aa)    
Predicted Functional Partners:
DvMF_0689
TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transport protein.
   
 0.682
DvMF_1690
PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transport protein, putative.
   
 0.682
DvMF_0819
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative.
   
 0.653
DvMF_1084
PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein.
   
 0.653
DvMF_2210
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein.
   
 0.653
DvMF_2211
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB.
   
 0.653
DvMF_2870
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative.
   
 0.653
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
   
 0.648
DvMF_1495
PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein.
   
 0.648
DvMF_2360
TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: WD40 domain protein beta Propeller; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system.
  
 
 0.648
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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