Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_2909KEGG: dde:Dde_1117 hypothetical protein. (503 aa)    
Predicted Functional Partners:
DvMF_2910
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein.
 
  
 0.914
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
  
 0.829
DvMF_3113
PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein.
 
    0.777
DvMF_0043
KEGG: dde:Dde_2536 hypothetical protein.
  
   0.767
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
   
 0.706
DvMF_3037
KEGG: wsu:WS1185 hypothetical protein.
  
     0.693
DvMF_2911
PFAM: flagellar protein FliS; KEGG: dde:Dde_1119 flagellar protein FliS.
       0.599
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
 
  
 0.567
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
   
 
  0.535
DvMF_2063
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214.
  
     0.533
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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