Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2910PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein. (418 aa)    
Predicted Functional Partners:
DvMF_2909
KEGG: dde:Dde_1117 hypothetical protein.
 
  
 0.914
DvMF_2911
PFAM: flagellar protein FliS; KEGG: dde:Dde_1119 flagellar protein FliS.
       0.651
DvMF_1368
PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like.
  
 0.650
DvMF_1108
Endo-1,4-beta-xylanase-like protein; KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase.
  
  
 0.619
DvMF_3113
PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein.
  
  
 0.609
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.588
DvMF_2908
TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin putative; KEGG: dde:Dde_1116 hypothetical protein.
 
     0.588
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
  
 0.586
DvMF_3180
PFAM: beta-lactamase domain protein; KEGG: dde:Dde_1331 metallo-beta-lactamase family protein.
  
  
 0.580
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
  
 0.575
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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