STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2913PFAM: peptidase M22 glycoprotease; KEGG: dde:Dde_1121 glycoprotease family protein, putative. (382 aa)    
Predicted Functional Partners:
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.972
DvMF_0277
PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein.
 
 
 0.970
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.903
DvMF_2914
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: dde:Dde_1122 peptidase RseP.
  
  
 0.823
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.805
DvMF_2916
PFAM: Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative.
       0.705
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
 
    0.687
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.609
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.607
DvMF_2822
KEGG: dde:Dde_0994 hypothetical protein.
  
     0.590
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.