STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2928PFAM: Methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein. (410 aa)    
Predicted Functional Partners:
DvMF_0663
Uncharacterized protein involved in methicillin resistance-like protein; KEGG: rci:RCIX258 hypothetical protein.
  
     0.675
DvMF_2927
KEGG: eca:ECA3573 tartronate semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding.
       0.558
DvMF_2385
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
  
     0.464
DvMF_2929
KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.
       0.454
DvMF_1490
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
  
     0.436
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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