Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DvMF_2929KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family. (263 aa)    
Predicted Functional Partners:
DvMF_2927
KEGG: eca:ECA3573 tartronate semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding.
 
 0.978
DvMF_0209
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein.
  
 
 0.909
DvMF_1898
PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; Belongs to the HpcH/HpaI aldolase family.
     
 0.800
DvMF_2801
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: dde:Dde_2751 glycerate 2-kinase.
 
  
 0.512
DvMF_2320
PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: gvi:glr3759 probable 3-hydroxyisobutyrate dehydrogenase.
 
  
 0.505
DvMF_2930
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dra:DR_0815 GntR family transcriptional regulator.
  
    0.480
DvMF_2600
PFAM: beta-lactamase domain protein; KEGG: bpt:Bpet0311 metallo-beta-lactamase superfamily protein.
  
  
 0.474
DvMF_1965
PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein.
 
  
 0.469
DvMF_2928
PFAM: Methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein.
       0.454
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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