Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_2946KEGG: ade:Adeh_3213 hypothetical protein. (351 aa)    
Predicted Functional Partners:
DvMF_2944
KEGG: rfr:Rfer_2442 hypothetical protein.
 
 
 0.959
DvMF_2947
PFAM: Carboxymuconolactone decarboxylase; KEGG: gbm:Gbem_3979 carboxymuconolactone decarboxylase.
    0.945
DvMF_2945
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mes:Meso_3909 cupin 2, conserved barrel.
 
    0.775
DvMF_1247
PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE2547 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily).
  
 
 0.728
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
  0.697
DvMF_2948
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: emi:Emin_0877 AraC family transcriptional regulator.
 
     0.526
DvMF_3184
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mes:Meso_2098 transcriptional regulator.
 
    0.515
DvMF_1413
KEGG: dra:DR_1144 hypothetical protein.
  
     0.467
DvMF_0677
PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3263 putative glycosyltransferase.
 
 
 
 0.465
DvMF_1842
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 putative glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC.
   
 
 0.432
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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