Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
DvMF_2947PFAM: Carboxymuconolactone decarboxylase; KEGG: gbm:Gbem_3979 carboxymuconolactone decarboxylase. (244 aa)    
Predicted Functional Partners:
DvMF_2945
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mes:Meso_3909 cupin 2, conserved barrel.
   
 0.973
DvMF_2946
KEGG: ade:Adeh_3213 hypothetical protein.
    0.945
DvMF_3184
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mes:Meso_2098 transcriptional regulator.
   
 0.944
DvMF_2653
PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3965 hypothetical protein.
 
  
 
0.927
DvMF_2944
KEGG: rfr:Rfer_2442 hypothetical protein.
 
  
 0.862
DvMF_1468
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_3011 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.666
DvMF_2948
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: emi:Emin_0877 AraC family transcriptional regulator.
 
   
 0.525
DvMF_0219
Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_486 alkyl hydroperoxide reductase.
  
  
 0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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