Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_2956TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1340 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (430 aa)    
Predicted Functional Partners:
DvMF_2953
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein.
 
  
 0.972
DvMF_2954
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component.
 
  
 0.972
DvMF_2365
PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein.
 
 0.935
DvMF_2955
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1339 ATPase.
 
  
 0.933
DvMF_1516
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_1651 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.847
DvMF_1494
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC.
  
 0.845
DvMF_1627
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein.
 
 0.838
DvMF_2162
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV_0433 outer membrane efflux protein.
 
 0.838
DvMF_2159
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_2809 RND efflux system, outer membrane lipoprotein, NodT family.
 
 0.837
DvMF_0035
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_3921 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.834
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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