STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2961KEGG: dde:Dde_1345 hypothetical protein. (171 aa)    
Predicted Functional Partners:
DvMF_0919
KEGG: dde:Dde_2592 hypothetical protein.
  
     0.713
DvMF_0918
KEGG: dde:Dde_2591 hypothetical protein.
  
     0.653
DvMF_0953
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
     0.539
recO
Recombination protein O RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.514
DvMF_1399
PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein.
  
     0.500
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
     0.495
DvMF_1527
KEGG: dde:Dde_0591 hypothetical protein.
  
     0.491
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.480
DvMF_3033
KEGG: lip:LI0093 hypothetical protein.
  
     0.465
DvMF_2361
TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like.
  
     0.464
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.