Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2972PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase. (303 aa)    
Predicted Functional Partners:
DvMF_1252
PFAM: Ethanolamine ammonia-lyase light chain; KEGG: pen:PSEEN0631 ethanolamine ammonia-lyase small subunit; Belongs to the EutC family.
     
  0.900
DvMF_1253
PFAM: Ethanolamine ammonia lyase large subunit; KEGG: psa:PST_3681 ethanolamine ammonia-lyase large subunit.
     
  0.900
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.824
DvMF_0811
PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 0.815
DvMF_0810
PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.714
DvMF_1126
PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase.
 
 
 0.625
DvMF_0409
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.610
DvMF_2146
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.539
DvMF_1653
KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8.
    
   0.534
DvMF_0658
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component.
 
  
 0.517
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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