Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_2974Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 putative transcriptional regulator. (160 aa)    
Predicted Functional Partners:
DvMF_2975
PFAM: nitroreductase; KEGG: mba:Mbar_A1379 NADPH-flavin oxidoreductase.
     
 0.466
DvMF_2976
PFAM: 4-oxalocrotonate tautomerase; KEGG: msi:Msm_0688 4-oxalocrotonate tautomerase.
       0.466
DvMF_2977
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_0069 NADH:flavin oxidoreductases, Old Yellow enzyme family.
     
 0.450
DvMF_2979
PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0650 NADPH-dependent FMN reductase.
 
     0.431
DvMF_2265
PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator.
  
  
 0.417
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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