STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2978KEGG: dde:Dde_1354 hypothetical protein. (110 aa)    
Predicted Functional Partners:
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.762
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.744
DvMF_1011
PFAM: transcriptional regulator TrmB; KEGG: dde:Dde_2665 hypothetical protein.
  
     0.631
DvMF_0052
KEGG: dde:Dde_3728 hypothetical protein.
  
     0.620
DvMF_0625
PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein.
  
     0.616
DvMF_0651
KEGG: dde:Dde_2862 hypothetical protein.
  
     0.558
DvMF_0145
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein; KEGG: dde:Dde_2176 rhodanese-like protein.
  
     0.532
DvMF_0967
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein.
  
     0.523
DvMF_2973
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ava:Ava_1542 hypothetical protein.
  
     0.519
DvMF_2267
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.
  
     0.512
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.