STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2991PFAM: Radical SAM domain protein; KEGG: pcl:Pcal_0853 radical SAM domain protein. (397 aa)    
Predicted Functional Partners:
DvMF_2990
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rpe:RPE_0932 isoprenylcysteine carboxyl methyltransferase.
  
    0.554
DvMF_2900
KEGG: dde:Dde_2578 AsnC family transcriptional regulator.
 
  
 0.548
DvMF_2503
SMART: regulatory protein AsnC/Lrp family; KEGG: dde:Dde_3179 AsnC family transcriptional regulator.
 
  
 0.545
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.515
DvMF_2713
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein.
 
  
 0.513
DvMF_1849
PFAM: Radical SAM domain protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB.
  
     0.506
DvMF_1838
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0802 radical SAM domain protein.
 
     0.444
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.