STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3013KEGG: pma:Pro1264 hypothetical protein. (240 aa)    
Predicted Functional Partners:
DvMF_3012
Hypothetical protein; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I.
 
    0.953
DvMF_3014
KEGG: mac:MA2205 hypothetical protein.
  
    0.878
DvMF_0747
KEGG: hmo:HM1_0929 hypothetical protein.
  
     0.683
DvMF_0437
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bph:Bphy_1097 magnesium-translocating P-type ATPase.
  
 
 0.660
DvMF_2992
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rca:Rcas_0372 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 
 0.660
DvMF_1872
PFAM: Acetamidase/Formamidase; KEGG: gka:GK1391 acetamidase/formamidase.
   
    0.619
DvMF_0669
KEGG: sus:Acid_4187 hypothetical protein.
  
     0.607
DvMF_2707
KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
    0.586
DvMF_2016
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
    
   0.573
DvMF_2408
PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229 putative inner membrane transport protein.
  
   
 0.493
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.