Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_3013KEGG: pma:Pro1264 hypothetical protein. (240 aa)    
Predicted Functional Partners:
DvMF_3012
Hypothetical protein; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I.
 
     0.952
DvMF_3014
KEGG: mac:MA2205 hypothetical protein.
  
    0.888
DvMF_0747
KEGG: hmo:HM1_0929 hypothetical protein.
  
     0.683
DvMF_0437
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bph:Bphy_1097 magnesium-translocating P-type ATPase.
  
 
 0.609
DvMF_2992
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rca:Rcas_0372 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 
 0.609
DvMF_0669
KEGG: sus:Acid_4187 hypothetical protein.
  
     0.607
DvMF_2707
KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.578
DvMF_2016
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
    
   0.518
DvMF_2408
PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229 putative inner membrane transport protein.
  
   
 0.492
DvMF_2916
PFAM: Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative.
   
  
 0.455
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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