Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_3017PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase. (360 aa)    
Predicted Functional Partners:
DvMF_3018
PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes.
 
  
 0.872
DvMF_2384
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein.
  
     0.738
DvMF_0573
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein.
  
     0.731
DvMF_3016
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein.
 
    
0.722
DvMF_3019
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0593 glycosyl transferase, group 1 family protein.
 
    
0.676
DvMF_1368
PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like.
  
 0.663
DvMF_0676
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0838 glycosyl transferase, group 1 family protein.
  
     0.606
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.588
DvMF_1108
Endo-1,4-beta-xylanase-like protein; KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase.
  
  
 0.566
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
  
 0.562
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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