Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_3018PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes. (446 aa)    
Predicted Functional Partners:
DvMF_3017
PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase.
 
  
 0.872
DvMF_2691
KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
  
  
 0.696
rny
RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
  
 0.686
DvMF_3016
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein.
 
  
 0.674
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
 
     0.643
DvMF_3019
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0593 glycosyl transferase, group 1 family protein.
  
  
 0.643
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
 
  
 0.607
DvMF_0300
KEGG: dde:Dde_2021 CgeB family protein.
 
  
 0.589
DvMF_0249
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein.
 
  
 0.587
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
  
 0.582
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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