STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3033KEGG: lip:LI0093 hypothetical protein. (298 aa)    
Predicted Functional Partners:
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
     0.682
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
  
     0.657
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.643
DvMF_2529
PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 3264: small-conductance mechanosensitive channel.
  
     0.615
DvMF_2908
TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin putative; KEGG: dde:Dde_1116 hypothetical protein.
  
     0.607
DvMF_0343
PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
     0.585
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
     0.579
DvMF_2361
TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like.
  
     0.576
DvMF_0406
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein.
  
     0.570
DvMF_2052
KEGG: lip:LI0583 hypothetical protein.
  
     0.562
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.