Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
DvMF_3037KEGG: wsu:WS1185 hypothetical protein. (172 aa)    
Predicted Functional Partners:
DvMF_3038
PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 transcriptional regulator, TetR family.
 
  
 0.727
DvMF_2909
KEGG: dde:Dde_1117 hypothetical protein.
  
     0.693
DvMF_0219
Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_486 alkyl hydroperoxide reductase.
  
  
 0.675
DvMF_3113
PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein.
  
     0.638
DvMF_1415
KEGG: paa:Paes_0502 hypothetical protein.
  
     0.603
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
   
 0.582
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
   
 0.563
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase.
     
 0.542
DvMF_2397
KEGG: dde:Dde_0264 hypothetical protein.
  
     0.537
DvMF_0510
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: glo:Glov_3529 C_GCAxxG_C_C family protein.
  
     0.463
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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