Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_3041PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein. (175 aa)    
Predicted Functional Partners:
DvMF_3040
KEGG: dde:Dde_1304 coenzyme A binding protein.
      0.938
DvMF_3042
PFAM: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like.
       0.629
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.571
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
  
     0.441
DvMF_0335
KEGG: dde:Dde_2003 hypothetical protein.
  
     0.424
DvMF_1755
PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein.
 
    0.422
DvMF_0247
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.419
DvMF_1617
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.419
DvMF_1555
PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B.
  
     0.414
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
  
     0.409
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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