STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3045KEGG: dde:Dde_1443 hypothetical protein. (149 aa)    
Predicted Functional Partners:
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.755
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.754
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.753
DvMF_0902
Hypothetical protein.
  
     0.721
DvMF_2764
KEGG: dde:Dde_2840 hypothetical protein.
  
     0.716
DvMF_0847
KEGG: dde:Dde_2292 hypothetical protein.
  
     0.707
DvMF_0922
Conserved hypothetical protein; KEGG: glo:Glov_3362 glycosyl transferase family 2.
  
     0.706
DvMF_0342
KEGG: dde:Dde_1995 hypothetical protein.
  
     0.694
DvMF_0568
KEGG: dde:Dde_1660 DafA protein.
  
     0.691
DvMF_1136
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein.
  
     0.670
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.