Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
DvMF_3053KEGG: sfu:Sfum_1960 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (272 aa)    
Predicted Functional Partners:
DvMF_3052
KEGG: sfu:Sfum_1959 putative molybdenum ABC transporter, solute-binding protein.
 
     0.943
DvMF_3054
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB.
  
  
 0.799
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
  
  
 0.654
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.510
DvMF_2389
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.489
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.483
DvMF_1491
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
  
 
 0.456
DvMF_2386
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
  
 
 0.456
DvMF_2713
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein.
 
  
0.415
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.407
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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