STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3060PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer. (659 aa)    
Predicted Functional Partners:
DvMF_0774
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 CheA signal transduction histidine kinase.
 
 
 0.912
DvMF_0619
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 CheA signal transduction histidine kinase.
 
 
 0.911
DvMF_0467
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 CheA signal transduction histidine kinase.
 
 
 0.908
DvMF_2643
PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_3100 response regulator receiver (CheY-like) modulated CheW protein.
 
 
 0.902
DvMF_0792
PFAM: CheW domain protein; KEGG: lip:LI1170 chemotaxis signal transduction protein.
 
 
 0.888
DvMF_0284
PFAM: CheW domain protein; KEGG: dde:Dde_2040 CheW protein.
 
 
 0.887
DvMF_2021
PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein.
 
 
 0.878
DvMF_0776
PFAM: CheW domain protein; KEGG: dde:Dde_1575 CheW protein.
 
 
 0.870
DvMF_2683
Multi-sensor hybrid histidine kinase; KEGG: rru:Rru_A2406 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.859
DvMF_2939
PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein.
 
 
 0.855
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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