STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3108PFAM: Rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein. (343 aa)    
Predicted Functional Partners:
DvMF_2997
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase.
  
   0.671
DvMF_2318
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.621
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.605
DvMF_2641
TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bba:Bd2196 twin-argine protein translocase component.
   
 
 0.605
DvMF_3124
TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_1469 twin-arginine translocation protein TatB.
   
 
 0.605
DvMF_3107
PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein.
       0.519
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.495
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
    0.452
DvMF_1024
KEGG: dol:Dole_1403 hypothetical protein.
 
     0.441
DvMF_0846
KEGG: dde:Dde_3699 hypothetical protein.
 
 
   0.436
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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