Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3113PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein. (589 aa)    
Predicted Functional Partners:
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
  
 0.823
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
 
  
 0.803
DvMF_2909
KEGG: dde:Dde_1117 hypothetical protein.
 
    0.777
DvMF_0043
KEGG: dde:Dde_2536 hypothetical protein.
  
   0.761
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
 
  
 0.740
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
  
 0.689
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
     0.664
DvMF_3112
PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77.
       0.664
DvMF_3037
KEGG: wsu:WS1185 hypothetical protein.
  
     0.638
DvMF_2910
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein.
  
  
 0.609
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.