STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3113PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein. (589 aa)    
Predicted Functional Partners:
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
 
  
 0.822
DvMF_1831
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR.
 
   
 0.817
DvMF_2909
KEGG: dde:Dde_1117 hypothetical protein.
 
     0.776
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
 
  
 0.766
DvMF_0043
KEGG: dde:Dde_2536 hypothetical protein.
  
   0.765
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
  
 0.720
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
     0.664
DvMF_3112
PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77.
       0.664
DvMF_0300
KEGG: dde:Dde_2021 CgeB family protein.
  
  
 0.644
DvMF_0922
Conserved hypothetical protein; KEGG: glo:Glov_3362 glycosyl transferase family 2.
  
  
 0.644
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.