STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3119PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein. (590 aa)    
Predicted Functional Partners:
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
 
  
 0.825
DvMF_0695
TIGRFAM: CAAX prenyl protease-related protein; PFAM: Abortive infection protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein.
  
  
 0.722
DvMF_2676
Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein, putative.
  
     0.653
DvMF_2709
PFAM: nitroreductase; KEGG: gsu:GSU2426 hypothetical protein.
 
  
 0.645
DvMF_2499
Cytochrome c class III; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
  
     0.641
DvMF_0967
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein.
  
     0.629
DvMF_2155
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
  
  
 0.592
DvMF_0441
PFAM: nitroreductase; KEGG: hmo:HM1_3019 nitroreductase family protein.
  
  
 0.547
DvMF_2852
PFAM: nitroreductase; KEGG: dde:Dde_0787 nitroreductase family protein.
  
  
 0.547
DvMF_2975
PFAM: nitroreductase; KEGG: mba:Mbar_A1379 NADPH-flavin oxidoreductase.
  
  
 0.547
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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