STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_3127PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1473 TPR repeat-containing protein. (206 aa)    
Predicted Functional Partners:
DvMF_3132
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF.
  
 
 0.862
DvMF_3129
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC.
 
  
 0.792
DvMF_3128
Hypothetical protein.
       0.773
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
 
     0.762
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
 
     0.749
DvMF_2908
TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin putative; KEGG: dde:Dde_1116 hypothetical protein.
  
     0.743
DvMF_0826
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF.
  
 
 0.741
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
     0.730
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.730
DvMF_2563
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.728
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.