Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_3130PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome c-type biogenesis protein CcmB. (225 aa)    
Predicted Functional Partners:
DvMF_3129
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC.
 
 0.999
DvMF_3133
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 0.996
DvMF_3131
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1476 ATPase.
 
  
  0.979
DvMF_0297
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_2024 cytochrome c assembly protein, putative.
  
 0.969
DvMF_3132
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF.
 
  
 0.954
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
     
  0.828
DvMF_0826
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF.
 
  
 0.796
DvMF_3127
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1473 TPR repeat-containing protein.
 
   
 0.742
DvMF_0376
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative.
  
  
  0.737
DvMF_2361
TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like.
  
   
 0.734
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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